Python Module Index

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lib5c
    lib5c.algorithms
    lib5c.algorithms.clustering
    lib5c.algorithms.clustering.adjacency
    lib5c.algorithms.clustering.enclave
    lib5c.algorithms.clustering.greedy
    lib5c.algorithms.clustering.knn
    lib5c.algorithms.clustering.quasicontiguity
    lib5c.algorithms.clustering.util
    lib5c.algorithms.clustering.valley
    lib5c.algorithms.convergency
    lib5c.algorithms.correlation
    lib5c.algorithms.determine_bins
    lib5c.algorithms.donut_filters
    lib5c.algorithms.enrichment
    lib5c.algorithms.expected
    lib5c.algorithms.express
    lib5c.algorithms.filtering
    lib5c.algorithms.filtering.bin_bin_filtering
    lib5c.algorithms.filtering.filter_functions
    lib5c.algorithms.filtering.fragment_bin_filtering
    lib5c.algorithms.filtering.fragment_fragment_filtering
    lib5c.algorithms.filtering.unsmoothable_columns
    lib5c.algorithms.filtering.util
    lib5c.algorithms.knight_ruiz
    lib5c.algorithms.outliers
    lib5c.algorithms.pca
    lib5c.algorithms.qnorm
    lib5c.algorithms.spline_normalization
    lib5c.algorithms.thresholding
    lib5c.algorithms.trimming
    lib5c.algorithms.variance
    lib5c.algorithms.variance.combined
    lib5c.algorithms.variance.cross_rep
    lib5c.algorithms.variance.deviation
    lib5c.algorithms.variance.estimate_variance
    lib5c.algorithms.variance.local
    lib5c.algorithms.variance.lognorm_dispersion
    lib5c.algorithms.variance.mle
    lib5c.algorithms.variance.nbinom_dispersion
    lib5c.contrib
    lib5c.contrib.iced
    lib5c.contrib.iced.balancing
    lib5c.contrib.interlap
    lib5c.contrib.interlap.util
    lib5c.contrib.luigi
    lib5c.contrib.luigi.config
    lib5c.contrib.luigi.pipeline
    lib5c.contrib.luigi.tasks
    lib5c.contrib.pybigwig
    lib5c.contrib.pybigwig.bigwig
    lib5c.contrib.seaborn
    lib5c.core
    lib5c.core.interactions
    lib5c.core.loci
    lib5c.core.mixins
    lib5c.operators
    lib5c.operators.base
    lib5c.operators.modeling
    lib5c.operators.qnorm
    lib5c.operators.standardization
    lib5c.operators.trimming
    lib5c.parsers
    lib5c.parsers.bed
    lib5c.parsers.bias
    lib5c.parsers.config
    lib5c.parsers.counts
    lib5c.parsers.genes
    lib5c.parsers.hic
    lib5c.parsers.loops
    lib5c.parsers.primer_names
    lib5c.parsers.primers
    lib5c.parsers.scaled
    lib5c.parsers.table
    lib5c.parsers.util
    lib5c.plotters
    lib5c.plotters.asymmetric_colormap
    lib5c.plotters.bias_heatmaps
    lib5c.plotters.boxplots
    lib5c.plotters.clustering
    lib5c.plotters.colormaps
    lib5c.plotters.colorscales
    lib5c.plotters.convergency
    lib5c.plotters.correlation
    lib5c.plotters.curve_fits
    lib5c.plotters.distance_dependence
    lib5c.plotters.distribution
    lib5c.plotters.enrichment
    lib5c.plotters.expected
    lib5c.plotters.extendable
    lib5c.plotters.extendable.base_extendable_heatmap
    lib5c.plotters.extendable.bed_extendable_heatmap
    lib5c.plotters.extendable.chipseq_extendable_heatmap
    lib5c.plotters.extendable.cluster_extendable_heatmap
    lib5c.plotters.extendable.domain_extendable_heatmap
    lib5c.plotters.extendable.extendable_figure
    lib5c.plotters.extendable.extendable_heatmap
    lib5c.plotters.extendable.gene_extendable_heatmap
    lib5c.plotters.extendable.legend_extendable_heatmap
    lib5c.plotters.extendable.motif_extendable_heatmap
    lib5c.plotters.extendable.rectangle_extendable_heatmap
    lib5c.plotters.extendable.ruler_extendable_heatmap
    lib5c.plotters.extendable.snp_extendable_heatmap
    lib5c.plotters.fits
    lib5c.plotters.heatmap
    lib5c.plotters.matrix
    lib5c.plotters.pca
    lib5c.plotters.queried_counts_heatmap
    lib5c.plotters.scatter
    lib5c.plotters.splines
    lib5c.plotters.variance
    lib5c.structures
    lib5c.structures.dataset
    lib5c.tools
    lib5c.tools.bias_heatmap
    lib5c.tools.bin
    lib5c.tools.boxplot
    lib5c.tools.colorscale
    lib5c.tools.convergency
    lib5c.tools.correlation
    lib5c.tools.dd_curve
    lib5c.tools.determine_bins
    lib5c.tools.distribution
    lib5c.tools.divide
    lib5c.tools.enrichment
    lib5c.tools.expected
    lib5c.tools.express
    lib5c.tools.heatmap
    lib5c.tools.helpers
    lib5c.tools.hic_extract
    lib5c.tools.iced
    lib5c.tools.interaction_score
    lib5c.tools.kr
    lib5c.tools.lib5c_toolbox
    lib5c.tools.log
    lib5c.tools.outliers
    lib5c.tools.parents
    lib5c.tools.pca
    lib5c.tools.pipeline
    lib5c.tools.pvalue_histogram
    lib5c.tools.pvalues
    lib5c.tools.qnorm
    lib5c.tools.qvalues
    lib5c.tools.remove
    lib5c.tools.smooth
    lib5c.tools.spline
    lib5c.tools.subtract
    lib5c.tools.threshold
    lib5c.tools.trim
    lib5c.tools.variance
    lib5c.tools.visualize_fits
    lib5c.tools.visualize_splines
    lib5c.tools.visualize_variance
    lib5c.util
    lib5c.util.annotationmap
    lib5c.util.ast_eval
    lib5c.util.bed
    lib5c.util.bedgraph
    lib5c.util.config
    lib5c.util.counts
    lib5c.util.counts_superdict
    lib5c.util.demo_data
    lib5c.util.dictionaries
    lib5c.util.distributions
    lib5c.util.donut
    lib5c.util.grouping
    lib5c.util.lowess
    lib5c.util.lru_cache
    lib5c.util.mathematics
    lib5c.util.metrics
    lib5c.util.optimization
    lib5c.util.parallelization
    lib5c.util.plotting
    lib5c.util.pretty_decorator
    lib5c.util.primers
    lib5c.util.sampling
    lib5c.util.scales
    lib5c.util.slicing
    lib5c.util.sorting
    lib5c.util.statistics
    lib5c.util.stratification
    lib5c.util.system
    lib5c.util.table
    lib5c.writers
    lib5c.writers.bedgraph
    lib5c.writers.bias
    lib5c.writers.config
    lib5c.writers.correlation
    lib5c.writers.counts
    lib5c.writers.hic
    lib5c.writers.pca
    lib5c.writers.primers
    lib5c.writers.table
    lib5c.writers.wustl