lib5c.writers.primers module¶
Module for writing primermaps and pixelmaps to bedfiles.
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lib5c.writers.primers.
write_pixelmap_legacy
(pixelmap, outfile)[source]¶ Write a pixelmap to a bin bedfile.
Parameters: - pixelmap (Dict[str, List[Dict[str, Any]]]) – The pixelmap to write. See
lib5c.parsers.primers.get_pixelmap()
. - outfile (str) – String reference to the file to write to.
- pixelmap (Dict[str, List[Dict[str, Any]]]) – The pixelmap to write. See
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lib5c.writers.primers.
write_primermap
(primermap, outfile, extra_column_names=None)[source]¶ Write a primermap to a primer bedfile.
Parameters: - primermap (Dict[str, List[Dict[str, Any]]]) – The primermap to write. See
lib5c.parsers.primers.load_primermap()
. - outfile (str) – String reference to the file to write to.
- extra_column_names (Optional[List[str]]) – Names of additional columns to include in the bedfile.
- primermap (Dict[str, List[Dict[str, Any]]]) – The primermap to write. See