Enrichments¶
An important endgame step in 5C analysis is the quantification of overlap
between specific interaction classes and traditional genomic annotations.
lib5c
provides a system for performing such an enrichment analysis.
Command-line interface¶
To plot traditional enrichments, run
$ lib5c plot enrichment
To plot the enrichment of occupied motifs with a specific orientation, run
$ lib5c plot convergency
Exposed functionality¶
The exposed functions for computing enrichments are:
lib5c.algorithms.enrichment.count_intersections_all()
lib5c.algorithms.enrichment.get_annotation_percentage_all()
lib5c.algorithms.enrichment.get_fold_change_all()
lib5c.algorithms.enrichment.get_fisher_exact_pvalue_all()
lib5c.algorithms.convergency.compute_convergency()
The exposed functions for visualization are: